Dougherty ER, Brun M, Trent JM, Bittner ML., "Conditioning-based modeling of contextual genomic regulation", IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun;6(2):310-20  (Journal Publication)  [More Details]  [Online]

Zhao C, Bittner ML, Chapkin RS, Dougherty ER., "Characterization of the effectiveness of reporting lists of small feature sets relative to the accuracy of the prior biological knowledge", Cancer Inform. 2010 Mar 18;9:49-60.  (Journal Publication)  [More Details]  [Online]

Dougherty ER, Bittner ML., "Causality, randomness, intelligibility, and the epistemology of the cell", Curr Genomics. 2010 Jun;11(4):221-37  (Journal Publication)  [More Details]  [Online]

Jianping Hua, Michael L. Bittner, and Edward R. Dougherty, "Evaluating gene set enrichment analysis via a hybrid data model", Cancer Inform. 2014 Feb 12;13(Suppl 1):1-16  (Journal Publication)  [More Details]  [Online]

Lori A. Dalton, Edward R. Dougherty, "Bayesian Minimum Mean-Square Error Estimation for Classification Error – Part II: Linear Classification of Gaussian Models", IEEE Transactions on Signal Processing 59(1): 130-144 (2011)  (Journal Publication)  [More Details]  [Online]

Lori A. Dalton, Edward R. Dougherty, "Bayesian Minimum Mean-Square Error Estimation for Classification Error – Part I: Definition and the Bayesian MMSE Error Estimator for Discrete Classification", IEEE Transactions on Signal Processing 59(1): 115-129 (2011)  (Journal Publication)  [More Details]  [Online]

Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty, "Intervention in Biological Phenomena Modeled by S-Systems", IEEE Trans. Biomed. Engineering 58(5): 1260-1267 (2011)  (Journal Publication)  [More Details]  [Online]

Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty, "Characterization of Drug Efficacy Regions Based on Dosage and Frequency Schedules", IEEE Trans. Biomed. Engineering 58(3): 488-498 (2011)  (Journal Publication)  [More Details]  [Online]

Lori A. Dalton, Edward R. Dougherty, "Application of the Bayesian MMSE estimator for classification error to gene expression microarray data", Bioinformatics [ISMB/ECCB] 27(13): 1822-1831 (2011)  (Journal Publication)  [More Details]  [Online]

Mohammadmahdi R. Yousefi, Jianping Hua, Edward R. Dougherty, "Multiple-rule bias in the comparison of classification rules", Bioinformatics 27(12): 1675-1683 (2011)  (Journal Publication)  [More Details]  [Online]