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Author: Datta, Aniruddha

Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson, "Examining de novo transcriptome assemblies via a quality assessment pipeline", IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, no. 2, pp. 494-505, 2018.  (Journal Publication)  [More Details]  [Online]

A. Katiyar, A. Mohanty, C. Sima, J. Hua, R. Lopes, A. Datta and M. L. Bittner, "A Bayesian Approach to Determine the Composition of Heterogeneous Cancer Tissue", BMC Bioinformatics  (Journal Publication)  [More Details]  [Online]

A. Al-Kawam, S. Khatri and A. Datta, "A GPU-CPU heterogeneous algorithm for NGS read alignment", International Journal of Computational Biology and Drug Design, Vol. 11, Nos. 1/2, 52-66, 2018.  (Journal Publication)  [More Details]  [Online]

A. Al Kawam, M. Alshawaqfeh, J. Cai, E. Serpedin and A. Datta, "Simulating Variance Heterogeneity in Quantitative Genome Wide Association Studies", BMC Bioinformatics  (Journal Publication)  [More Details]  [Online]

S Sridharan, R Varghese, V Venkatraj, and A Datta, "Hypoxia Stress Response Pathways: Modeling and Targeted Therapy", IEEE Journal of Biomedical and Health Informatics, Vol. 21, No. 3, 875-885, May 2017. DOI 10.1109/JBHI.2016.2559460.  (Journal Publication)  [More Details]  [Online]

P. Venkat, K. R. Narayanan and A. Datta, "A Bayesian Network Based Approach to Selection of Intervention Points in the MAPK Plant Defense Response Pathway", Journal of Computational Biology, Vol. 24, no. 4, 327-339, 2017. doi:10.1089/cmb.2016.0089.  (Journal Publication)  [More Details]  [Online]

P. Venkat, J. Hua, C. Sima, M. Cypert, M. Bittner and A. Datta, "Epiuorescent Imaging Study of the Effect of Anti-Diabetic Drug Metformin on Colorectal Cancer Cell Lines In Vitro", Journal of Cancer Research & Therapy,5(4):19-23, May 2017.  (Journal Publication)  [More Details]  [Online]

P. Goel, A. Datta and M. S. Mannan, "Industrial Alarm Systems: Challenges and Opportunities", Journal of Loss Prevention in the Process Industries, Vol. 50, 23-36, 2017  (Journal Publication)  [More Details]  [Online]

O. A. Arshad and A. Datta, "Towards Targeted Combinatorial Therapy Design for the Treatment of Castration-resistant Prostate Cancer", BMC Bioinformatics, 18(S4):134, 2017. doi:10.1186/s12859-017-1522-2.  (Journal Publication)  [More Details]  [Online]

J. Abante, N. Ghaffari, C. Johnson and A. Datta, "HiMMe: Using Genetic Patterns as a Proxy for Genome Assembly Reliability Assessment", BMC Genomics, 18:694, 2017.   (Book Chapter)  [More Details]  [Online]

A. Al-Kawam, S. Khatri and A. Datta, "A Survey of Software and Hardware Approaches to Short Read Alignment in Next Generation Sequencing", IEEE/ACM Trans. on Computational Biology and Bioinformatics, Vol. 14, No. 6, 1202-1213, Nov.-Dec. 2017. DOI: 10.1109/TCBB.2016.2586070.  (Journal Publication)  [More Details]  [Online]

A. Al Kawam, A. Sen, A. Datta and N. Dickey, "Understanding the Bioinformatics Challenges of Integrating Genomics into Healthcare", IEEE Journal of Biomedical and Health Informatics, DOI: 10.1109/JBHI.2017.2778263, to appear.  (Journal Publication)  [More Details]  [Online]

S. Khadraoui, M. Fnaiech, H. Nounou, M. Nounou, J. Guzinski, H. AbuRub, A. Datta, and S. P. Bhattacharyya, "Measurement-based control approach for tuning PID controllers: Application to induction machines", Journal of Control and Decision, Vol. 3, 179-196, 2016  (Journal Publication)  [More Details]  [Online]

S. Khadraoui, H. Nounou, M. Nounou, A. Datta, and S. P. Bhattacharyya, "Adaptive controller design for unknown systems using measured data", Asian Journal of Control, Vol. 18, no. 5, 1-14, 2016.  (Journal Publication)  [More Details]  [Online]

S. Khadraoui, F. Harrou, H. Nounou, M. Nounou, A. Datta and S. P. Bhattacharyya, "A Measurement-based Control Design Approach for Efficient Cancer Chemotherapy", Information Sciences, Vol. 333, 108-125, 2016.  (Journal Publication)  [More Details]  [Online]

A. Mohanty, A. Datta and J. Venkatraj, "A Conjugate Exponential Model for Cancer Tissue Heterogeneity", IEEE Journal of Biomedical and Health Informatics, Vol. 27, No. 2, 699-709, March 2016; DOI:10.1109/JBHI.2015.2410279.  (Journal Publication)  [More Details]  [Online]

S. Sridharan, A. Datta, R. Barhoumi, D. Shpati, U. Venkatraj and V. Venkatraj, "Effect of Free Radical Quenching in a Progressive Breast Cancer Cell line Model", Review of Bioinformatics and Biometrics, doi:10.12783/ rbb.2015.0401.01, Vol. 4, No. 1, 1-11, May 2015.  (Journal Publication)  [More Details]  [Online]

S. Khadraoui, H. Nounou, M. Nounou, A. Datta and S. P. Bhattacharyya, "A nonparametric approach to design robust controllers for uncertain systems: Application to an air flow heating system", Journal of Process Control, Vol. 36, 1-10, 2015  (Journal Publication)  [More Details]  [Online]

N. Ghaffari, O. A. Arshad, H. Jeong, J. Thiltges, M. F. Criscitiello, B.-J. Yoon, A. Datta and C. D. Johnson, "Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline",   (Journal Publication)  [More Details]  [Online]

S. Khadraoui, H. Nounou, M. Nounou, A. Datta, and S. P. Bhattacharyya, "A Measurement-based Approach for Designing Fixed-order Controllers for Systems with Unknown Closed-loop Architecture", Asian Journal of Control, Vol. 18, no. 1, 1-13, 2016; DOI: 10.1002/asjc.1069, 2014.  (Journal Publication)  [More Details]  [Online]

S. Khadraoui, H. Nounou, M. Nounou, A. Datta and S. P. Bhattacharyya, "A Model-free Design of Reduced-Order Controllers and Application to a DC Servo motor", Automatica, Vol. 50, No. 8, 2142-2149, August 2014.  (Journal Publication)  [More Details]  [Online]

M. A. Fnaiech, S. Khadraoui, M. Fnaiech, H. Nounou, M. Nounou, J. Guzinski, H. Abu-Rub, A. Datta, and S. P. Bhattacharyya, "Model-Free Controller Tuning based on DFT Processing: Application to Induction Motor Drives", IEEE Journal of Emerging and Selected Topics in Power Electronics, Vol. 2, No. 4, 1013-1023, December 2014.  (Journal Publication)  [More Details]  [Online]

M. A. Fnaiech, S. Khadraoui, H. N. Nounou, M. N. Nounou, J. Guzinski, H. Abu-Rub, A. Datta, and S. P. Bhattacharyya, "A Measurement-Based Approach For Speed Control Of Induction Machines", IEEE Journal of Emerging and Selected Topics in Power Electronics, Vol. 2, No. 2, 308-318, June 2014.  (Journal Publication)  [More Details]  [Online]

Khadraoui, H. Nounou, M. Nounou, A. Datta and S. P. Bhattacharyya, "A Measurement-based Technique for Designing Fixed-order RST Controllers and Application to a Coupled Water Tank System", Systems Science & Control Engineering, Vol. 2, No. 1, 484-492, 2014.  (Journal Publication)  [More Details]  [Online]

A. Mohanty, A. Datta and J. Venkatraj, "Using the Message Passing Algorithm on Discrete Data to Detect faults in Boolean Regulatory Networks", Algorithms for Molecular Biology, 9:20, DOI: 10.1186/s13015-014-0020-6, 2014.  (Journal Publication)  [More Details]  [Online]

A. Mohanty, A. Datta and J. Venkatraj, "A Model for Cancer Tissue Heterogeneity", IEEE Trans. on Biomedical Engineering, Vol. 61, No. 3, 966-974, March 2014  (Journal Publication)  [More Details]  [Online]

S. Khadraoui, H. Nounou, M. Nounou, A. Datta and S. P. Bhattacharyya, "A Measurement-Based Approach for Designing Reduced-Order Controllers with Guaranteed Bounded Error", International Journal of Control, Vo. 86, No. 9, 15861596, 2013.  (Journal Publication)  [More Details]  [Online]

Rezaei Yousefi, Datta, A. ; Dougherty, E., "Optimal Intervention in Markovian Gene Regulatory Networks with Random-Length Therapeutic Response to Antitumor Drug", Biomedical Engineering, IEEE Transactions on , vol.60, no.12, pp.3542,3552, Dec. 2013  (Journal Publication)  [More Details]  [Online]

N. Mohsenizadeh, H. Nounou, M. Nounou, A. Datta and S. P. Bhattacharyya, "Linear Circuits: A Measurement Based Approach", International Journal of Circuit Theory and Applications, doi: 10.1002/cta.1934, 28 pages, July 2013.  (Journal Publication)  [More Details]  [Online]

N. Meskin, H. Nounou, M. Nounou and A. Datta, "Parameter Estimation of Biological Phenomena: An Unscented Kalman Filter Approach", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 10, No. 2, 537-543, March-April 2013.  (Journal Publication)  [More Details]  [Online]

B. He, R. Biard, R. Butera, A. Datta, S. George, B. Hecht, A. Hero, G. Lazzi, R. C. Lee, J. Liang, M. Newman, G. C. Y. Peng, E. Perreault, M. Ramasubramanian, M. D. Wang, J. Wilkswo, G.-Z. Yang and Y.-T. Zhang, "Grand Challenges in Interfacing Engineering with Life Sciences and Medicine", IEEE Trans. on Biomedical Engineering, Vol. 60, No. 3, 589-598, March 2013.  (Journal Publication)  [More Details]  [Online]

Yousefi, M. R., Datta, A., and Dougherty, E. R., "Optimal Intervention Strategies for Therapeutic Methods With Fixed-Length Duration of Drug Effectiveness", IEEE Transactions on Signal Processing, Vol. 60, No. 9, 4930-4944  (Journal Publication)  [More Details]  [Online]

Nounou, M., Nounou, H., Meskin, N., Datta, A., and Dougherty, E. R., "Multiscale Denoising of Biological Data: A Comparative Analysis", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 9, No. 5, 1539-1545.  (Journal Publication)  [More Details]  [Online]

Nounou HN, Nounou MN, Meskin N, Datta A, Dougherty ER., "Fuzzy Intervention in Biological Phenomena", IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1819-25.   (Journal Publication)  [More Details]  [Online]

Knight, J., Datta, A., and Dougherty, E. R., "Generating Stochastic Gene Regulatory Networks Consistent With Pathway Information and Steady-State Behavior", IEEE Transactions on Biomedical Engineering, Vol. 59, No. 6, 1701-1710, 2012  (Journal Publication)  [More Details]  [Online]

A. Datta, R. Layek, H. Nounou, M. Nounou, N. Mohsenizadeh and S. P. Bhattacharyya, "Towards Data Based Adaptive Control", International Journal of Adaptive Control and Signal Processing, Vol. 27, 122-135, 2013.  (Journal Publication)  [More Details]  [Online]

Ritwik Layek, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty, "Cancer therapy design based on pathway logic", Bioinformatics 27(4): 548-555 (2011)  (Journal Publication)  [More Details]  [Online]

Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty, "Intervention in Biological Phenomena Modeled by S-Systems", IEEE Trans. Biomed. Engineering 58(5): 1260-1267 (2011)  (Journal Publication)  [More Details]  [Online]