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Year: 2009

Youting Sun, Ulisses Braga-Neto and Edward R. Dougherty, "Impact of Missing Value Imputation on Classification for DNA Microarray Gene Expression Data – A Model-Based Study", Published in: ·Journal EURASIP Journal on Bioinformatics and Systems Biology Volume 2009, January 2009 Article No. 4   (Journal Publication)  [More Details]  [Online]

Xiaoning Qian, Ivan Ivanov, Noushin Ghaffari and Edward R. Dougherty, "Intervention in gene regulatory networks via greedy control policies based on long-run behavior", BMC Systems Biology, 3(61): 16 pages, 2009.  (Journal Publication)  [More Details]  [Online]

Xiaoning Qian and Edward R. Dougherty, "On the long-run sensitivity of probabilistic Boolean network", Journal of Theoretical Biology, 257(4): 560--577, 2009  (Journal Publication)  [More Details]  [Online]

Q. Xu, J. Hua, Z. Xiong, M.L. Bittner, and E. R. Dougherty, "The Effect of Microarray Image Compression on Expression-Based Classification", Signal, Image and Video Processing February 2009, Volume 3, Issue 1, pp 53-61  (Journal Publication)  [More Details]  [Online]

Lori Dalton, Virginia Ballarin, Marcel Brun, "Clustering Algorithms: On Learning, Validation, Performance, and Applications to Genomics", Curr Genomics. 2009 September; 10(6): 430–445.  (Book Chapter)  [More Details]  [Online]

J. Hua, W. Tembe and E. R. Dougherty, "Performance of feature-selection methods in the classification of high-dimension data", Pattern Recognition vol. 42, 409-424 2009  (Journal Publication)  [More Details]  [Online]

E.R. Dougherty, J. Hua, and C. Sima, "Performance of Feature Selection Methods", Current Genomics Vol. 10(6), 365-374 2009  (Journal Publication)  [More Details]  [Online]

Dougherty ER, Brun M, Trent JM, Bittner ML., "Conditioning-based modeling of contextual genomic regulation", IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun;6(2):310-20  (Journal Publication)  [More Details]  [Online]

Chao Sima, Jianping Hua and Sungwon Jung, "Inference of Gene Regulatory Networks Using Time-Series Data: A Survey", Current Genomics - CURR GENOMICS , vol. 10, no. 6, pp. 416-429, 2009  (Journal Publication)  [More Details]  [Online]

Byung-Jun Yoon, "Hidden Markov Models and their Applications in Biological Sequence Analysis", Curr Genomics. 2009 September; 10(6): 402–415  (Journal Publication)  [More Details]  [Online]

Xiaoning Qian , Sing-Hoi Sze, Byung-Jun Yoon, "Querying pathways in protein interaction networks based on hidden Markov models", Journal of Computational Biology, 16(2):145--157, 2009  (Journal Publication)  [More Details]  [Online]