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Year: 2011

Zollanvari, A., Braga-Neto, U. M., and Dougherty E. R., "Analytic Study of Performance of Error Estimators for Linear Discriminant Analysis", IEEE Transactions on Signal Processing, Vol. 59, No. 9, 4238-4255, September, 2011  (Journal Publication)  [More Details]  [Online]

Zhao, C., Ivanov, I., Bittner, M. L., and Dougherty, E. R., "Pathway Regulatory Analysis in the Context of Bayesian Networks Using the Coefficient of Determination", Biological Systems, Vol. 19, No. 4, 651-682, December, 2011  (Journal Publication)  [More Details]  [Online]

Y. Wang, N. Ghaffari, C. D. Johnson, U. M. Braga-Neto, H. Wang, R. Chen, and H. Zhou, "Evaluation of Coverage and Depth of Transcriptome by RNA-Seq in Chickens", BMC Bioinformatics, 12 (Suppl 10):S5, 2011  (Journal Publication)  [More Details]  [Online]

Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty, "Characterization of Drug Efficacy Regions Based on Dosage and Frequency Schedules", IEEE Trans. Biomed. Engineering 58(3): 488-498 (2011)  (Journal Publication)  [More Details]  [Online]

Sima, C., Braga-Neto, U. M., and Dougherty, E. R., "High-Dimensional Bolstered Error Estimation", Bioinformatics, Vol. 27, No. 21, 3056-3064, November, 2011  (Journal Publication)  [More Details]  [Online]

Shah M.S., Schwartz S.L., Zhao C., Davidson L.A., Zhou B., Lupton J.R., Ivanov I, and Chapkin R.S., "Integrated microRNA and mRNA expression profiling in a rat colon carcinogenesis model: Effect of a chemoprotective diet", Physiological Genomics, 2011: 43(10)  (Journal Publication)  [More Details]  [Online]

Ritwik Layek, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty, "Cancer therapy design based on pathway logic", Bioinformatics 27(4): 548-555 (2011)  (Journal Publication)  [More Details]  [Online]

Richardson WJ, Metz RP, Moreno MR, Wilson E, JE Moore, Jr., "A Device to Study the Effects of Stretch Gradients on Cell Behavior", J Biomech Eng. 2011 Oct;133(10):101008. doi: 10.1115/1.4005251  (Journal Publication)  [More Details]  [Online]

Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty, "Intervention in Biological Phenomena Modeled by S-Systems", IEEE Trans. Biomed. Engineering 58(5): 1260-1267 (2011)  (Journal Publication)  [More Details]  [Online]

Mohammadmahdi R. Yousefi, Jianping Hua, Edward R. Dougherty, "Multiple-rule bias in the comparison of classification rules", Bioinformatics 27(12): 1675-1683 (2011)  (Journal Publication)  [More Details]  [Online]

Lori A. Dalton, Edward R. Dougherty, "Bayesian Minimum Mean-Square Error Estimation for Classification Error – Part I: Definition and the Bayesian MMSE Error Estimator for Discrete Classification", IEEE Transactions on Signal Processing 59(1): 115-129 (2011)  (Journal Publication)  [More Details]  [Online]

Lori A. Dalton, Edward R. Dougherty, "Bayesian Minimum Mean-Square Error Estimation for Classification Error – Part II: Linear Classification of Gaussian Models", IEEE Transactions on Signal Processing 59(1): 130-144 (2011)  (Journal Publication)  [More Details]  [Online]

Ghaffari, N., Ivanov, I., Qian, X., and Dougherty, E. R., "A CoD-Based Stationary Control Policy for Intervening in Large Gene Regulatory Networks", BMC Bioinformatics 2011, 12(Suppl 10):S10doi:10.1186/1471-2105-12-S10-S10  (Journal Publication)  [More Details]  [Online]

Fryer JD, Yu P, Kang H, Mandel-Brehm C, Carter AN, Crespo-Barreto J, Gao Y, Flora A, Shaw C, Orr HT, Zoghbi HY., "Exercise and genetic rescue of SCA1 via the transcriptional repressor Capicua.", Science. 2011 Nov 4;334(6056):690-3. doi: 10.1126/science.1212673.  (Journal Publication)  [More Details]  [Online]

Esfahani, M. S., Yoon, B-J., and Dougherty, E. R., "Probabilistic Reconstruction of the Tumor Progression Process in Gene Regulatory Networks in the Presence of Uncertainty", BMC Bioinformatics, 12(Suppl 10):S9, October, 2011  (Journal Publication)  [More Details]  [Online]

Dougherty, E. R., Zollanvari, A., and Braga-Neto, U. M., "The Illusion of Distribution-Free Small-Sample Classification in Genomics", Current Genomics, Vol. 12, No. 5, 333-341, August, 2011  (Journal Publication)  [More Details]  [Online]

Dougherty ER., "Validation of gene regulatory networks: scientific and inferential", Briefings in Bioinformatics, 2011 May;12(3):245-52  (Journal Publication)  [More Details]  [Online]

A.B. Melo, M. Silva, C. Magalhaes, L.H.V.G. Gil, E.M.F. Carvalho, G.R. Bertani, U.M. Braga-Neto, E.T.A. Marques and M.T. Cordeiro, "Description of a Prospective 17DD Yellow Fever Vaccinee Cohort in Recife, Brazil", The American Journal of Tropical Medicine and Hygiene, Vol. 85, No. 4, Ocotber 2011, pp. 739-747.  (Journal Publication)  [More Details]  [Online]